Software tools and databases

• NIA Array Analysis: statistical analysis of microarray data  

• NIA Mouse Gene Index: databases of genes and alternative transcripts  

• CisFinder: identification of transcription factor-binding motifs from ChIP-seq data  

• CisView: visualization of cis-regulatory modules and transcription factor-binding sites  

• Protein Interactions: database of mouse protein interactions transferred from other species  

• mRNA half-life: database for mRNA half-life of 19,977 genes in mouse ES cells

• Blastocyst in situ hybridization: spatial expression patterns of 91 transcription factors  

• ES cell in situ hybridization: spatial expression patterns of 244 transcription factors  

• NIA Mouse cDNA Project (completed: 1998 – 2005)
  
  
• Gene Expression Atlas: Database for gene expression levels of mouse organs, tissues, and stem cells