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Minoru S.H. Ko, M.D., Ph.D.

  1. Noda M, Ko M, Ogura A, Liu D-G, Amano T, Takano T, and Ikawa Y. (1985). Sarcoma viruses carrying ras oncogenes induce differentiation-associated properties in a neuronal cell line. Nature 318: 73-78.[Abs]

  2. Takano T and Ko MSH (1985). Enhancer sequences for gene expression regulation. In: Takano (ed.), Introduction to Genetic Engineering. Nanzan-Doh, Press. pp. 227-256.

  3. Ko MSH and Takano T. (1989). A highly inducible system of gene expression by positive feedback production of glucocorticoid receptors. DNA 8: 127-133.[Abs]

  4. Ko MSH, Takahashi N, Sugiyama N, and Takano T. (1989). An auto-inducible vector conferring high glucocorticoid-inducibility upon stable transformant cells. Gene 84: 383-389.[Abs]

  5. Ko MSH, Ko SBH, Takahashi N, Nishiguchi K, and Abe K. (1990). Unbiased amplification of a highly complex mixture of DNA fragments by "lone linker"-tagged PCR. Nucleic Acids Research 18: 4293-4294.[Abs]

  6. Ko MSH, Nakauchi H, and Takahashi N. (1990). The dose-dependence of glucocorticoid-inducible gene expression results from changes in the number of transcriptionally active templates. EMBO Journal 9: 2834-2882.[Abs]

  7. Ko MSH. (1990). An "equalized cDNA library" by the reassociation of short double-stranded cDNAs. Nucleic Acids Research 18: 5705-5711.[Abs]

  8. Ko MSH. (1991). A stochastic model for gene induction. J. Theor. Biol. 153: 181-184.[Abs]

  9. Ko MSH. (1992). Induction mechanism of a single gene molecule: Stochastic or Deterministic? BioEssays 14: 341-346.[Abs]

  10. Takahashi N and Ko MSH. (1993). The short 3'-end region of complementary DNAs as PCR-based polymorphic markers for an expression map of the mouse genome. Genomics 16: 161-168.[Abs]

  11. Ko MSH. (1993). An equalized cDNA library and its application. Tan. Kaku. Koso. 38: 420-428.[Abs]

  12. Rowe LB, Nadeau JH, Turner R, Frankel WN, Letts VA, Eppig JT, Ko MSH, Thurston SJ and Birkenmeier EH. (1994). Maps from two interspecific backcross DNA panels are available as a community genetic mapping resource. Mamm. Genome 5: 253-274.[Abs]

  13. Horton JH, Hagen MD and Ko MSH. (1994). Optimized conditions for cycle sequencing of PCR products. PCR Methods Appl. 3: 359-360.[Abs]

  14. Wang X, Qian J and Ko MSH. (1994). Simple and robust screening of pooled YAC libraries by the restriction enzyme digestion of PCR products. Genet. Anal. Techn. Appl. 11: 63-68.[Abs]

  15. Ko MSH, Wang X, Horton JH, Hagen MD, Takahashi N, Maezaki Y and Nadeau JH. (1994). Genetic mapping of 40 cDNA clones on the mouse genome by PCR. Mamm. Genome 5: 349-355.[Abs]

  16. Takahashi N and Ko MSH. (1994). Towards a whole cDNA catalog: an equalized cDNA library from mouse embryos. Genomics 23: 202-210.[Abs]

  17. Ko MSH. (1994). Strategy for the construction of an equalized cDNA library. In: Nojima (ed.), Gene Libraries, Yoh-Do Sha, Press. pp. 135-144.

  18. Ko MSH. (1995). Equalized cDNA libraries. In: Larrick JW and Siebert PD (eds), Reverse Transcriptase PCR. Ellis Horwood, London. pp. 245-264.

  19. Harada H, Hashimoto K and Ko MSH. (1996). The gene for multiple familial trichoepithelioma maps to chromosome 9p21. J. Invest. Dermatology 107: 41-43.[Abs]

  20. Yotsumoto S, Fujiwara H, Horton JH, Mosby TA, Wang X, Cui Y and Ko MSH. (1996). Cloning and expression analyses of mouse dystroglycan gene: Specific expression in maternal decidua at the peri-implantation stage. Hum. Mol. Genet. 5: 1259-1267.[Abs]

  21. Harada H, Hashimoto K, Toi Y, Yotsumoto S and Ko MSH. (1997). Basal cell carcinoma occurring in multiple familial trichoepithelioma: detection of loss of heterozygosity in chromosome 9q. Arch. Dermatol. 133: 666-6667.[Abs]

  22. D'Esposito M, Matarazzo MR, Ciccodicola A, Strazzullo M, Mazzarella R, Quaderi NA, Fujiwara H, Ko MSH, Rowe LB, Ricco A, Archidiacono N, Rocchi M, Schlessinger D and D'Urso M. (1997). Differential expression pattern of XqPAR-linked genes SYBL1 and IL9R correlates with the structure and evolution of the region. Hum. Mol. Genet. 6: 1917-1923.[Abs]

  23. Srivastava AK, Pispa J, Hartung AJ, Du Y, Ezer S, Jenks T, Shimada T, Pekkanen M, Ko MSH, Thesleff I, Kere J and Schlessinger D. (1997). The Tabby phenotype is caused by mutation in a mouse homologue of the EDA gene, which reveals novel mouse and human exons and encodes a protein (ectodysplasin-A) with collagenous domains. Proc. Natl. Acad. Sci. USA 94: 13069-13074.[Abs]

  24. Jaradat SA, Ko MSH and Grossman LI. (1998). Tissue specific expression and mapping of the COX7AH gene in mouse. Genomics 49: 363-370.[Abs]

  25. Yotsumoto S, Shimada T, Cui CY, Nakashima H, Fujiwara H and Ko MSH. (1998). Expression of Adrenomedullin, a Hypotensive Peptide, in the Trophoblast Giant Cells at the Embryo Implantation Site in Mouse. Dev. Biol. 203: 264-275.[Abs]

  26. Schlessinger D and Ko MSH. (1998). Developmental genomics and its relation to aging. Genomics 52: 113-118.[Abs]

  27. Abe K, Ko MSH and MacGregor GR. (1998). A systematic molecular genetic approach to study mammalian germline development. Int. J. Dev. Biol. 42: 1051-1066.[Abs]

  28. Ko, MSH., Threat, TA, Wang, X, Horton, JH, Cui, Y, Pryor, E, Paris, J, Wells-Smith, J, Kitchen, JR, Rowe, LB, Eppig, J, Satoh, T, Brant, L, Fujiwara, H, Yotsumoto, S and Nakashima, H. (1998). Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum. Mol. Genet. 7: 1967-1978.[Abs]

  29. Nakashima H, Grahovac MJ, Mazzarella R, Kitchen JR, Threat TA and Ko MSH. (1999). Two novel mouse genes - Nubp2, mapped to the t-complex on Chromosome 17, and Nubp1, mapped to Chromosome 16 - establish a new gene family of nucleotide binding proteins in eukaryotes. Genomics 60: 152-160. [Abs]

  30. Leach R, Ko MSH, Krawetz S. (1999). Assignment of amyloid-precursor-like protein 2 gene (APLP2) to 11q24 by fluorescent in situ hybridization. Cytogenet. Cell Genet. 87: 215-216.[Abs]

  31. Yotsumoto S, Kanzaki T, Ko MSH. (2000). Beta subunit of the high affinity immunoglobulin E receptor, a candidate for atopic dermatitis, is not imprinted. Br. J. Dermatol. 142:370-371. [Abs]

  32. Ko MSH, Kitchen JR, Wang X., Threat TA, Wang X, Hasegawa A, Sun T, Grahovac MJ, Kargul GJ, Lim MK, Cui Y, Sano Y, Tanaka T, Liang Y, Mason S, Paonessa PD, Sauls AD, DePalma GE, Sharara R, Rowe LB, Eppig J, Morrell C, Doi H (2000). Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development 127: 1737-1749.[Abs]

  33. Chou SR, Brownell A, Ko MSH, Kaplan J. (2000). Interferon gamma receptor gene: key role in determining accessibility of NK-triggering antigens to recognition by self-reactive NK cells. Cell Immunol., 200: 88-97.[Abs]

  34. Kargul GJ, Nagaraja R, Shimada T, Grahovac MJ, Lim MK, Nakashima H, Waeltz P, Ma P, Chen EY, Schlessinger D, and Ko MSH. (2000). Eleven densely clustered genes, six of them novel, in 176 kb of mouse t-complex DNA. Genome Res. 10: 916-923.[Abs]

  35. Tanaka TS, Jaradat SA, Lim MK, Kargul GJ, Wang X, Grahovac MJ, Pantano S, Sano Y, Piao Y, Nagaraja R, Doi H, Wood WH 3rd, Becker KG, and Ko MSH. (2000). Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Proc. Natl. Acad. Sci. U S A 97: 9127-9132.[Abs]

  36. Nicholson RH, Pantano S, Eliason JF, Galy A, Weiler S, Kaplan J, Hughes MR, and Ko MSH. (2000). Phemx, a novel mouse gene expressed during hematopoiesis, maps to the imprinted cluster on distal chromosome 7. Genomics 68: 13-21. [Abs]

  37. Cocchia M, Huber R, Pantano S, Chen EY, Forabosco A, Ko MSH, and Schlessinger D (2000). PLAC1, an Xq26 gene with placenta-specific expression. Genomics 68: 305-312. [Abs]

  38. Kargul GJ, Dudekula DB, Qian Y, Lim MK, Jaradat SA, Tanaka TS, Carter MG, and Ko MSH (2001). Verification and initial annotation of the NIA mouse 15K cDNA clone set. Nature Genetics 28: 17-18. [Abs]

  39. Cintron VJ, Ko MSH, Chi KD, Gross JP, Srinivas PR, Goustin AS, Grunberger G (2001). Genetic mapping and functional studies of a natural inhibitor of the insulin receptor tyrosine kinase: the mouse ortholog of human alpha2-HS glycoprotein. Int. J. Exp. Diabetes Res. 1: 249-263. [Abs]

  40. Piao Y, Ko NT, Lim MK, and Ko MSH (2001). Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Genome Res. 11: 1553-1558. [Abs]

  41. Barrett T, Xie T, Piao Y, Dillon-Carter O, Kargul GJ, Lim MK, Chrest FJ, Wersto R, Rowley DL, Juhaszova M, Zhou L, Vawter MP, Becker KG, Cheadle C, Wood WH 3rd, McCann UD, Freed WJ, Ko MSH, Ricaurte GA, Donovan DM (2001). A murine dopamine neuron-specific cDNA library and microarray: increased COXI expression during methamphetamine neurotoxicity. Neurobiol. Dis. 8: 822-833. [Abs]

  42. Hudson TJ, Church DM, Greenaway S, Nguyen H, Cook A, Steen RG, Van Etten WJ, Castle AB, Strivens MA, Trickett P, Heuston C, Davison C, Southwell A, Hardisty R, Varela-Carver A, Haynes AR, Rodriguez-Tome P, Doi H, Ko MSH, Pontius J, Schriml L, Wagner L, Maglott D, Brown SD, Lander ES, Schuler G, Denny P (2001). A radiation hybrid map of mouse genes. Nat. Genet. 29: 201-205. [Abs]

  43. Sano Y, Shimada T, Nakashima H, Nicholson RH, Eliason JF, Kocarek TA, Ko MSH (2001). Random monoallelic expression of three genes clustered within 60 kb of mouse t complex genomic DNA. Genome Res. 11: 1833-1841. [Abs]

  44. Ko MSH (2001). Embryogenomics: developmental biology meets genomics. Trends Biotechnol. 19: 511-518. [Abs]

  45. Leach R, Duniec-Dmuchowski Z, Tanaka T, Ko MSH, Krawetz SA. (2001) Assignment of OVCOV1 (alias CGI-15) to human chromosome 20 band q13.1-->q13.2 by fluorescent in situ hybridization. Cytogenet. Cell Genet. 94(3-4): 252-253. [Abs]

  46. Chen G, Jaradat SA, Banerjee N, Tanaka TS, Ko MSH and Zhang MQ (2002). Evaluation and comparison of clustering algorithms in analyzing ES cell gene expression data. Statistica Sinica 12: 241-262.

  47. Cui CY, Durmowicz M, Tanaka TS, Hartung AJ, Tezuka T, Hashimoto K, Ko MSH, Srivastava AK, Schlessinger D. (2002). EDA targets revealed by skin gene expression profiles of wild-type, Tabby and Tabby EDA-A1 transgenic mice. Hum. Mol. Genet. 11: 1763-1773. [Abs]

  48. Leach RE, Duniec-Dmuchowski ZM, Pesole G, Tanaka TS, Ko MSH, Armant RD, Krawetz SA. (2002). Identification, molecular characterization, and tissue expression of OVCOV1. Mamm. Genome 13: 619-624. [Abs]

  49. VanBuren V, Piao Y, Dudekula DB, Qian Y, Carter MG, Martin PR, Stagg CA, Bassey UC, Aiba K, Hamatani T, Kargul GJ, Luo AG, Kelso J, Hide W and Ko MSH. (2002). Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. Genome Res. 12: 1999-2003. [Abs]

  50. Tanaka TS, Kunath T, Kimber WL, Jaradat SA, Stagg CA, Usuda M, Yokota T, Niwa H, Rossant J, and Ko MSH. (2002). Gene expression profiling of embryo-derived stem cells reveals candidate genes associated with pluripotency and lineage specificity. Genome Res. 12: 1921-1928. [Abs]

  51. Suemizu H, Aiba H, Yoshikawa T, Sharov AA, Shimozawa N, Tamaoki N, and Ko MSH. (2003). Expression profiling of placentomegaly associated with nuclear transplantation of mouse ES cells. Dev. Biol. 253: 36-53. [Abs]

  52. Kimber WL, Puri N, Borgmeyer C, Ritter D, Sharov A, Seidman M, and Ko MSH. (2003). Efficacy of 2-methoxyethoxy (2'-MOE)-modified antisense oligonucleotides for the study of mouse preimplantation development. Reprod Biomed Online 6: 318-322. [Abs]

  53. Carter MG, Hamatani T, Sharov AA, Carmack CE, Qian Y, Ko NT, Dudekula DB, Brzoska PM, Hwang SS, and Ko MSH. (2003). In situ-synthesized novel microarray optimized for mouse stem cell and early developmental expression profiling. Genome Res. 13: 1011-1021. [Abs]

  54. Galaviz-Hernandez C, Stagg C, de Ridder G, Tanaka TS, Ko MSH, Schlessinger D, Nagaraja R. (2003). Plac8 and Plac9, novel placental-enriched genes identified through microarray analysis. Gene. 309: 81-89. [Abs]

  55. Buttitta L, Tanaka TS, Chen AE, Ko MS, Fan CM. (2003). Microarray analysis of somitogenesis reveals novel targets of different WNT signaling pathways in the somitic mesoderm. Dev Biol. 258(1): 91-104. [Abs]

  56. Carter MG, Piao Y, Dudekula DB, Qian Y, VanBuren V, Sharov AA, Tanaka TS, Martin PR, Bassey UC, Stagg CA, Aiba K, Hamatani T, Matoba R, Kargul GJ and Ko MSH. (2003). The NIA cDNA Project in mouse stem cells and early embryos. Comptes rendus - Biologies 326(10-11): 931-940. [Abs]

  57. Sharov AA, Piao Y, Matoba R, Dudekula DB, Qian Y, VanBuren V, Falco G, Martin PR, Stagg CA, Bassey UC, Wang Y, Carter MG, Hamatani T, Aiba K, Akutsu H, Sharova L, Tanaka TS, Kimber WL, Yoshikawa T, Jaradat SA, Pantano S, Nagaraja R, Boheler KR, Taub D, Hodes RJ, Longo DL, Schlessinger D, Keller J, Klotz E, Kelsoe G, Umezawa A, Vescovi AL, Rossant J, Kunath T, Hogan BL, Curci A, D'Urso M, Kelso J, Hide W, Ko MSH. (2003). Transcriptome analysis of mouse stem cells and early embryos. PLoS Biol. 1: 410-419. [Abs]

  58. Kimber WL, Piao Y, Tanaka TS, Yoshikawa T, Hamatani T, Carter MG, and Ko MSH (2003). Systematic Analysis of Mouse Preimplantation Development. In “Mammalian Embryo Genomics” edited by Watson A. OECD 2003: ISBN 92-64-10426-7.

  59. Hamatani T, Carter MG, Sharov AA and Ko MSH. (2004). Dynamics of global gene expression changes during mouse preimplantation development. Dev. Cell. 6: 1-20. [Published online Dec. 18, 2003].

  60. Ko MSH. (2004). Embryogenomics of pre-implantation mammalian development: current status. Reprod. Fertil. Dev. 16(2): 79-85. [Online]

  61. Abe K, Yuzuriha M, Sugimoto M, Ko MS, Brathwaite M, Waeltz P, Nagaraja R. (2004) Gene content of the 750-kb critical region for mouse embryonic ectoderm lethal tcl-w5. Mammalian Genome. 4: 265-276. [Abs]

  62. Hamatani T, Daikoku T, Wang H, Matsumoto H, Carter MG, Ko MSH, Dey SK. (2004). Global gene expression analysis identifies molecular pathways distinguishing blastocyst dormancy and activation. Proc Natl Acad Sci USA. 101: 10326-10331. [Abs]

  63. Tanaka TS, Ko MSH. (2004). A global view of gene expression in the preimplantation mouse embryo: morula versus blastocyst. Eur J Obstet Gynecol Reprod Biol. 115 Suppl 1: S85-S91. [Abs]

  64. Hamatani T, Falco G, Carter MG, Akutsu H, Stagg CA, Sharov AA, Dudekula DB, VanBuren V, Ko MSH. (2004). Age-associated alteration of gene expression patterns in mouse oocytes. Human Molecular Genetics. 13(19): 2263-2278. [Abs]

  65. Tanaka TS, Carter MG, Aiba K, Jaradat SA, and Ko MSH (2004). Genomic approaches to stem cell biology. To be published as Chapter 20 in Human Pluripotent Stem Cells. Edited by Odorico JS, Pedersen RA, and Zhang SU. BIOS Scientific Publishers, Ltd.

  66. VanBuren V and Ko MSH (2004). Embryogenomics. Submitted for the publication in Encyclopedia of Molecular Biology and Molecular Medicine, Wiley-VCH.

  67. VanBuren V and Ko MSH (2004). Regulation of genome activity and genetic networks in mammals. In preparation for a chapter of the text book entitled "Mammalian Genomics." Edited by A Rubinsky and JM Graves.

  68. Ottolenghi C, Uda M, Hamatani T, Crisponi L, Garcia JE, Ko M, Pilia G, Sforza C, Schlessinger D, Forabosco A. (2004). Aging of oocyte, ovary, and human reproduction. Ann. NY Acad. Sci. 2004 1034: 117-131. [Abs]

  69. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morrin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J; MGC Project Team. (2004). The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 14(10B): 2121-2127. [Abs]

  70. Herrera L, Ottolenghi C, Garcia-Ortiz JE, Pellegrini M, Manini F, Ko MS, Nagaraja R, Forabosco A, Schlessinger D. (2005). Mouse ovary developmental RNA and protein markers from gene expression profiling. Dev Biol. 279(2): 271-290. [Abs]

  71. Sakatani T, Kaneda A, Iacobuzio-Donahue CA, Carter MG, Witzel SD, Okano H, Ko MS, Ohlsson R, Longo DL, Feinberg AP. (2005). Loss of imprinting of Igf2 alters intestinal maturation and tumorigenesis in mice. Science. 307(5717): 1976-1978. [Abs]

  72. Sharov AA, Dudekula DB, Ko MSH. (2005). A web-based tool for principal component and significance analysis of microarray data. Bioinformatics. 21(10): 2548-2549. [Abs]

  73. Ko MSH (2005). Molecular biology of preimplantation embryos: primer for philosophical discussions. Reprod Biomed Online. 10 Suppl 1: 80-87. [Abs]

  74. McMahan J, Cohen J, Ko M, Johnson M, Robertson J, Murphy T, Brinsden P, Hussein F, Savulescu J, McLaren A, McLean S, Harris J, Schulman J, Edwards R, Pedersen R, Stock G, Grudzinskas G, Boivin J. (2005). Discussion (day 2 session 2): Modern genetics and the human embryo in vitro. Reprod Biomed Online. 10 Suppl 1: 107-110. [Abs]

  75. Sharov AA, Dudekula DB, Ko MS (2005). Genome-wide assembly and analysis of alternative transcripts in mouse. Genome Res. 15(5): 748-754. [Abs]

  76. Akagi T, Usuda M, Matsuda T, Ko MSH, Niwa H, Asano M, Koide H, and Yokota T. (2005). Identification of Zfp-57 as a downstream molecule of STAT3 and Oct-3/4 in embryonic stem cells. Biochem. Biophys. Res. Commun. 31(1): 23-30. [Abs]

  77. Tamura T, Thotakura P, Tanaka TS, Ko MS, Ozato K (2005). Identification of target genes and a unique cis-element regulated by IRF-8 in developing macrophages. Blood. 106(6):1938-1947. [Abs]

  78. Carter MG, Sharov AA, VanBuren V, Dudekula DB, Carmack CE, Nelson C and Ko MSH (2005). Transcript copy number estimation using a mouse wholegenome oligonucleotide microarray. Genome Biology. 6(7): R61. [Abs]

  79. Aiba K, Sharov AA, Carter MG, Foroni C, Vescovi AL, Ko MS. (2006). Defining a developmental path to neural fate by global expression profiling of mouse embryonic stem cells and adult neural stem/progenitor cells. Stem Cells. 24(4): 889-895. [Abs]

  80. Yoshikawa T, Piao Y, Zhong J, Carter MG, Wang Y, Goldberg I, and Ko MSH. (2006). High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization. Gene Expr. Patterns. 6(2): 213-224. [Abs]

  81. Park JM, Kohn MJ, Bruinsma MW, Vech C, Intine RV, Fuhrmann S, Grinberg A, Mukherjee I, Love PE, Ko MS, Depamphilis ML, Maraia RJ. (2006). The multifunctional RNA-binding protein La is required for mouse development and for the establishment of embryonic stem cells. Mol. Cell Biol. 26(4):1445-1451. [Abs]

  82. Das B, Cai L, Carter MG, Piao YL, Sharov AA, Ko MS, Brown DD. (2006) Gene expression changes at metamorphosis induced by thyroid hormone in Xenopus laevis tadpoles. Dev Biol. 291(2): 342-355. [Abs]

  83. Ko MSH, McLaren A (2006). Epigenetics of germ cells, stem cells, and early embryos. Dev. Cell 10: 161-166. [Abs]

  84. Ko MSH (2006). Expression profiling of the mouse early embryo: Reflections and perspectives. Dev Dyn. 235(9): 2437-2448. [Abs]

  85. Rogers NT, Halet G, Piao Y, Carroll J, Ko MSH and Swann K (2006). A Ca2+ signal during mouse egg activation affects preimplantation development, gene expression patterns, and blastocyst quality. Reproduction. 132(1): 45-57. [Abs]

  86. Tanaka TS, Lopez de Silanes I, Sharova LV, Akutsu H, Yoshikawa T, Amano H, Yamanaka S, Gorospe M, Ko MSH (2006). Esg1, expressed exclusively in preimplantation embryos, germline, and embryonic stem cells, is a putative RNA-binding protein with broad RNA targets. Dev. Growth Differ. 48(6): 381-90. [Abs]

  87. Falco G, Stanghellini I, Ko MSH (2006). Use of Chuk as an internal standard suitable for quantitative RT-PCR in mouse preimplantation embryos. Reprod. BioMed. Online 13(3): 394-403. [Abs]

  88. Nakatake Y, Fukui N, Iwamatsu Y, Masui S, Takahashi K, Yagi R, Yagi K, Miyazaki JI, Matoba R, Ko MS, Niwa H (2006). Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells. Mol. Cell Biol. 26(20): 7772-7782. [Abs]

  89. Aiba K, Carter MG, Matoba R, Ko MSH (2006). Genomic approaches to early embryogenesis and stem cell biology. Semin. Reprod. Med. 24(5): 330-339. [Abs]

  90. Sharov AA, Dudekula DB, Ko MS (2006). CisView: A browser and database of cis-regulatory modules predicted in the mouse genome. DNA Res. 13(3): 123-134. [Abs]

  91. Matoba R, Niwa H, Masui S, Ohtsuka S, Carter MG, Sharov AA, and Ko MSH (2006). Dissecting Oct3/4-regulated gene networks in embryonic stem cells by expression profiling. PLoS One, 1: e26, 2006. [Abs]

  92. Hamatani T, Ko MSh, Yamada M, Kuji N, Mizusawa Y, Shoji M, Hada T, Asada H, Maruyama T, Yoshimura Y (2006). Global gene expression profiling of preimplantation embryos. Hum Cell. 19(3): 98-117. [Abs]

  93. Masui S, Nakatake Y, Toyooka Y, Shimosato D, Yagi R, Takahashi K, Okochi H, Okuda A, Matoba R, Sharov AA, Ko MS, Niwa H (2007). Pluripotency governed by Sox2 via regulation of Oct3/4 expression in mouse embryonic stem cells. Nat Cell Biol. 9(6): 625-635. [Abs]

  94. Ulloa-Montoya F, Kidder BL, Pauwelyn KA, Chase LG, Luttun A, Crabbe A, Geraerts M, Sharov AA, Piao Y, Ko MS, Hu WS, Verfaillie CM (2007). Comparative transcriptome analysis of embryonic and adult stem cells with extended and limited differentiation capacity. Genome Biol. 8(8): R163. [Abs]

  95. Sharova LV, Sharov AA, Piao Y, Shaik N, Sullivan T, Stewart CL, Hogan BL, Ko MS (2007). Global gene expression profiling reveals similarities and differences among mouse pluripotent stem cells of different origins and strains. Dev Biol. 307(2): 446-459. [Abs]

  96. Falco G, Lee SL, Stanghellini I, Bassey UC, Hamatani T, Ko MS (2007). Zscan4: A novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells. Dev Biol. 307(2): 539-550. [Abs]

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